Stem-loop mze-mir-17

Accession

MI0034112

Description

Metriaclima zebra mze-mir-17 precursor miRNA

Sequence

12263 reads, 474.0 reads per million, 7 experiments

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuaCUGCAGUGAAGGCACUUUCAGC
.(((((((((.((.(((((.(((..((....))..)))))))).)).)))))))))....

Structure

---C         A  G     G   uu  g 
    AAAGUGCUU CA UGCAG UAg  uu u
    ||||||||| || ||||| |||  ||  
    UUUCACGGA GU ACGUC auc  aa u
CGAC         A  G     -   uu  c 

Annotation confidence High

Genome context

AGTA03000134.1: 1275021-1275080 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mze-mir-17

Mature mze-miR-17-5p

• Accession: MIMAT0042340
• Description: Metriaclima zebra mze-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-17-3p

• Accession: MIMAT0059977
• Description: Metriaclima zebra mze-miR-17-3p mature miRNA
• Sequence: 39 - CUGCAGUGAAGGCACUUUCAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381