Stem-loop mze-mir-27e-1

Accession

MI0034122

Description

Metriaclima zebra mze-mir-27e-1 precursor miRNA

Sequence

51883 reads, 2103.0 reads per million, 7 experiments

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 

Annotation confidence Not enough data

Genome context

AGTA03000280.1: 168868-168931 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-27e-1

Mature mze-miR-27e-3p

• Accession: MIMAT0042350
• Description: Metriaclima zebra mze-miR-27e-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCAGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381