Stem-loop mze-mir-338-2

Accession

MI0034136

Description

Metriaclima zebra mze-mir-338-2 precursor miRNA

Sequence

1566 reads, 160.0 reads per million, 7 experiments

AACAACAUCCUGAUGCUGUCUGGGUguguaaagcagaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.(((...)))..))))))))))))).))).))))).

Structure

-     C   -         UCU    -g   a 
 AACAA AUC CUGAUGCUG   GGGU  ugu  
 ||||| ||| |||||||||   ||||  ||| a
 UUGUU UAG GACUACGAC   CUca  acg  
G     U   U         ---    ag   a 

Annotation confidence Not enough data

Genome context

AGTA03000173.1: 1120034-1120094 [-]

Mature mze-miR-338-2-5p

• Accession: MIMAT0059994
• Description: Metriaclima zebra mze-miR-338-2-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGAUGCUGUCUGGGU - 25
• Evidence: experimental ; Illumina [1]

Mature mze-miR-338-3p

• Accession: MIMAT0042360
• Description: Metriaclima zebra mze-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381