Stem-loop mze-mir-96-1

Accession

MI0034145

Description

Metriaclima zebra mze-mir-96-1 precursor miRNA

Sequence

1297 reads, 70.0 reads per million, 7 experiments

UUUGGCACUAGCACAUUUUUGCUucuguauauauacuuugagCAAUUAUGUGUAGUGCCAAUAU
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure

--U         G     UU      -cu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   AACCGUGAU GUGUA  AACgag   cau u
UAU         -     UU      uuu   a 

Annotation confidence High

Genome context

AGTA03000163.1: 2031915-2031978 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-96-1

Mature mze-miR-96-5p

• Accession: MIMAT0042365
• Description: Metriaclima zebra mze-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-96-1-3p

• Accession: MIMAT0059999
• Description: Metriaclima zebra mze-miR-96-1-3p mature miRNA
• Sequence: 43 - CAAUUAUGUGUAGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381