miRBase entry: mze-mir-106

Stem-loop mze-mir-106


Accession
MI0034146
Description
Metriaclima zebra mze-mir-106 precursor miRNA


Sequence

9064 reads, 332.0 reads per million, 7 experiments
UAAAGUGCUUACAGUGCAGGUAGugaugauaaucuggccuACUGCAUUGUGAGCACUUCUUU
..(((((((((((((((((...(((((....)))..))...)))))))))))))))))....

Structure
--UA                 GUA  --   g 
    AAGUGCUUACAGUGCAG   Gu  gau a
    |||||||||||||||||   ||  |||  
    UUCACGAGUGUUACGUC   cg  cua u
UUUC                 Auc  gu   a 


Annotation confidence High
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Genome context
AGTA03000037.1: 128261-128322 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mze-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-106-5p

Accession MIMAT0042366
Description Metriaclima zebra mze-miR-106-5p mature miRNA
Sequence 1 - UAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature mze-miR-106-3p

Accession MIMAT0060001
Description Metriaclima zebra mze-miR-106-3p mature miRNA
Sequence 41 - ACUGCAUUGUGAGCACUUCUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381