Stem-loop mze-mir-96-2

Accession

MI0034147

Description

Metriaclima zebra mze-mir-96-2 precursor miRNA

Sequence

1266 reads, 68.0 reads per million, 7 experiments

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagCAAUCAUGUGUGGUGCCAAUAU
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure

--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   AACCGUGGU GUGUA  AACgag      c
UAU         -     CU      uuuucu 

Annotation confidence Not enough data

Genome context

AGTA03000076.1: 165121-165184 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-96-2

Mature mze-miR-96-5p

• Accession: MIMAT0042365
• Description: Metriaclima zebra mze-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-96-2-3p

• Accession: MIMAT0060000
• Description: Metriaclima zebra mze-miR-96-2-3p mature miRNA
• Sequence: 43 - CAAUCAUGUGUGGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381