Stem-loop mze-mir-93

Accession

MI0034148

Description

Metriaclima zebra mze-mir-93 precursor miRNA

Sequence

5026 reads, 187.0 reads per million, 7 experiments

AAAAGUGCUGUUUGUGCAGGUAGcagucauccaccuACUGCAAAACCAGCACUUCAGG
..((((((((.((.(((((.(((..(.....)..)))))))).)).))))))))....

Structure

--AA        U  G     G   ca u 
    AAGUGCUG UU UGCAG UAG  g c
    |||||||| || ||||| |||  | a
    UUCACGAC AA ACGUC Auc  c u
GGAC        C  A     -   ca c 

Annotation confidence High

Genome context

AGTA03000037.1: 128456-128513 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mze-mir-93

Mature mze-miR-93-5p

• Accession: MIMAT0042367
• Description: Metriaclima zebra mze-miR-93-5p mature miRNA
• Sequence: 1 - AAAAGUGCUGUUUGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-93-3p

• Accession: MIMAT0060002
• Description: Metriaclima zebra mze-miR-93-3p mature miRNA
• Sequence: 37 - ACUGCAAAACCAGCACUUCAGG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381