miRBase entry: mze-mir-24a-1

Stem-loop mze-mir-24a-1


Accession
MI0034151
Description
Metriaclima zebra mze-mir-24a-1 precursor miRNA


Sequence

25071 reads, 847.0 reads per million, 7 experiments
UGCCUACUGAGCUGAUAAUCAGUccuacagaaucacUGGCUCAGUUCAGCAGGAAC
..(((.(((((((((...(((((...........))))).))))))))).)))...

Structure
-UG   A         UAA     ccua 
   CCU CUGAGCUGA   UCAGU    c
   ||| |||||||||   |||||    a
   GGA GACUUGACU   GGUca    g
CAA   C         --C     cuaa 


Annotation confidence Not enough data
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Genome context
AGTA03000056.1: 3239640-3239695 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-24a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-24a-1-5p

Accession MIMAT0060005
Description Metriaclima zebra mze-miR-24a-1-5p mature miRNA
Sequence 1 - UGCCUACUGAGCUGAUAAUCAGU - 23
Evidence experimental
Illumina [1]

Mature mze-miR-24a-3p

Accession MIMAT0042369
Description Metriaclima zebra mze-miR-24a-3p mature miRNA
Sequence 37 - UGGCUCAGUUCAGCAGGAAC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381