Stem-loop mze-mir-22c

Accession

MI0034154

Description

Metriaclima zebra mze-mir-22c precursor miRNA

Sequence

1741 reads, 80.0 reads per million, 7 experiments

CGUUCUUCACUGGCUAGCUUUAugucccacgccccacacuaAAGCUGCCAGUUGAAGAGCUGU
.(((((((((((((.((((((((((..........))).)))))))))))).))))))))...

Structure

--C        -     U       -   ccca 
   GUUCUUCA CUGGC AGCUUUA ugu    c
   |||||||| ||||| ||||||| |||     
   CGAGAAGU GACCG UCGAAau aca    g
UGU        U     -       c   cccc 

Annotation confidence High

Genome context

AGTA03000050.1: 1939611-1939673 [-]

Mature mze-miR-22c-5p

• Accession: MIMAT0060010
• Description: Metriaclima zebra mze-miR-22c-5p mature miRNA
• Sequence: 1 - CGUUCUUCACUGGCUAGCUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-22c-3p

• Accession: MIMAT0042372
• Description: Metriaclima zebra mze-miR-22c-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGUUGAAGAGCUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381