Stem-loop mze-mir-24a-4

Accession

MI0034158

Description

Metriaclima zebra mze-mir-24a-4 precursor miRNA

Sequence

25102 reads, 851.0 reads per million, 7 experiments

UGCCUACUGAGCUGAUAACAGUUagauauuaacaagcacUGGCUCAGUUCAGCAGGAAC
..(((.(((((((((...((((...............))))..))))))))).)))...

Structure

-UG   A         UAA    Uagaua 
   CCU CUGAGCUGA   CAGU      u
   ||| |||||||||   ||||      u
   GGA GACUUGACU   GUca      a
CAA   C         -CG    cgaaca 

Annotation confidence High

Genome context

AGTA03000035.1: 9108395-9108453 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-24a-4

Mature mze-miR-24a-4-5p

• Accession: MIMAT0060007
• Description: Metriaclima zebra mze-miR-24a-4-5p mature miRNA
• Sequence: 1 - UGCCUACUGAGCUGAUAACAGUU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-24a-3p

• Accession: MIMAT0042369
• Description: Metriaclima zebra mze-miR-24a-3p mature miRNA
• Sequence: 40 - UGGCUCAGUUCAGCAGGAAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381