Stem-loop mze-mir-139

Accession

MI0034165

Description

Metriaclima zebra mze-mir-139 precursor miRNA

Sequence

19296 reads, 619.0 reads per million, 7 experiments

UCUACAGUGCAUGUGUCUCCAGUauguuagugaugcuacUGGAGACCCAGCUCUGUUGGAAU
(((((((.((.((.((((((((((.((.......)))))))))))).)))).))).))))..

Structure

--    -   U  A  U          u  ua 
  UCUA CAG GC UG GUCUCCAGUa gu  g
  |||| ||| || || |||||||||| ||  u
  AGGU GUC CG AC CAGAGGUcau cg  g
UA    U   U  -  C          -  ua 

Annotation confidence High

Genome context

AGTA03000100.1: 429047-429108 [+]

Mature mze-miR-139-5p

• Accession: MIMAT0042380
• Description: Metriaclima zebra mze-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-139-3p

• Accession: MIMAT0060015
• Description: Metriaclima zebra mze-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCAGCUCUGUUGGAAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381