Stem-loop mze-mir-218a-1

Accession

MI0034182

Description

Metriaclima zebra mze-mir-218a-1 precursor miRNA

Sequence

31621 reads, 1275.0 reads per million, 7 experiments

UUGUGCUUGAUCUAACCAUGUGgcugccagguuccuaucguggaacaugguucuuucaagcaccaug
..((((((((...((((((((..((((..(((....))))))).))))))))...))))))))....

Structure

--UU        UCU        Gg    ca   u 
    GUGCUUGA   AACCAUGU  cugc  ggu c
    ||||||||   ||||||||  ||||  |||  
    cacgaacu   uugguaca  ggug  cua c
guac        uuc        -a    --   u 

Annotation confidence Not enough data

Genome context

AGTA03000135.1: 644767-644833 [+]

Mature mze-miR-218a-5p

• Accession: MIMAT0042317
• Description: Metriaclima zebra mze-miR-218a-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381