miRBase entry: mze-mir-29b-2

Stem-loop mze-mir-29b-2


Accession
MI0034205
Description
Metriaclima zebra mze-mir-29b-2 precursor miRNA


Sequence

39 reads, 2.0 reads per million, 7 experiments
CUGGUUUCAGAUGGUGGCUUAGAguauugucaucuaucUAGCACCAUUUGAAAUCAGUGUU
((((((((((((((((.((((((.........))))...))))))))))))))))))....

Structure
----                G  ---    gua 
    CUGGUUUCAGAUGGUG CU   UAGA   u
    |||||||||||||||| ||   ||||   u
    GACUAAAGUUUACCAC GA   aucu   g
UUGU                -  Ucu    acu 


Annotation confidence Not enough data
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Genome context
AGTA03000066.1: 815564-815624 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-29b-2-5p

Accession MIMAT0060036
Description Metriaclima zebra mze-miR-29b-2-5p mature miRNA
Sequence 1 - CUGGUUUCAGAUGGUGGCUUAGA - 23
Evidence experimental
Illumina [1]

Mature mze-miR-29b-3p

Accession MIMAT0042402
Description Metriaclima zebra mze-miR-29b-3p mature miRNA
Sequence 39 - UAGCACCAUUUGAAAUCAGUGUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381