Stem-loop mze-mir-29b-1

Accession

MI0034206

Description

Metriaclima zebra mze-mir-29b-1 precursor miRNA

Sequence

300 reads, 10.0 reads per million, 7 experiments

CUGGUUUCACGUGGUGGUUUAGAugugugcugcucuugucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((..((((((..(.......)..)))))))))))).)))))))))....

Structure

----         C      GU      gu ug 
    CUGGUUUCA GUGGUG  UUAGAu  g  c
    ||||||||| ||||||  ||||||  |  u
    GACUAAAGU UACCAC  GAUcug  c  g
UUGU         U      --      uu uc 

Annotation confidence High

Genome context

AGTA03000610.1: 581-643 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-29b-1

Mature mze-miR-29b-1-5p

• Accession: MIMAT0060035
• Description: Metriaclima zebra mze-miR-29b-1-5p mature miRNA
• Sequence: 1 - CUGGUUUCACGUGGUGGUUUAGA - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-29b-3p

• Accession: MIMAT0042402
• Description: Metriaclima zebra mze-miR-29b-3p mature miRNA
• Sequence: 41 - UAGCACCAUUUGAAAUCAGUGUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381