Stem-loop mze-mir-2187b

Accession

MI0034237

Description

Metriaclima zebra mze-mir-2187b precursor miRNA

Sequence

177 reads, 10.0 reads per million, 7 experiments

UUUAAUUAGUACAGCCUGUAUUaguaaugucaucuauucUUUACAGGCUAUGCUAAUCUaugc
....(((((((.((((((((..((.((((.....)))))).)))))))).)))))))......

Structure

--UUUA       C        UU  u    u 
      AUUAGUA AGCCUGUA  ag aaug c
      ||||||| ||||||||  || |||| a
      UAAUCGU UCGGACAU  Uc uuau u
cguaUC       A        -U  -    c 

Annotation confidence Medium

Genome context

AGTA03000189.1: 1096550-1096612 [+]

Mature mze-miR-2187b-5p

• Accession: MIMAT0042431
• Description: Metriaclima zebra mze-miR-2187b-5p mature miRNA
• Sequence: 1 - UUUAAUUAGUACAGCCUGUAUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-2187b-3p

• Accession: MIMAT0060057
• Description: Metriaclima zebra mze-miR-2187b-3p mature miRNA
• Sequence: 40 - UUUACAGGCUAUGCUAAUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381