Stem-loop mze-mir-212b

Accession

MI0034239

Description

Metriaclima zebra mze-mir-212b precursor miRNA

Sequence

2285 reads, 121.0 reads per million, 7 experiments

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUgac    aug   c
UC  U     C       -      ----   aaa 

Annotation confidence High

Genome context

AGTA03000075.1: 717737-717803 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-212b

Mature mze-miR-212b-5p

• Accession: MIMAT0042433
• Description: Metriaclima zebra mze-miR-212b-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-212b-3p

• Accession: MIMAT0060059
• Description: Metriaclima zebra mze-miR-212b-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381