Stem-loop mze-mir-219c

Accession

MI0034240

Description

Metriaclima zebra mze-mir-219c precursor miRNA

Sequence

16502 reads, 587.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUGugaaauuucaaauccaacccgAGAAUUGUGCCUGGACAUCUGU
.(((.(((((..((((((((((((((....))).........)))))))))))..))))))))...

Structure

--U   U     AA           ---------   a 
   GAU GUCCA  CGCAAUUCUUG         uga a
   ||| |||||  |||||||||||         |||  
   CUA CAGGU  GUGUUAAGAgc         acu u
UGU   -     CC           ccaaccuaa   u 

Annotation confidence High

Genome context

AGTA03000082.1: 1150671-1150736 [+]

Mature mze-miR-219c-5p

• Accession: MIMAT0060060
• Description: Metriaclima zebra mze-miR-219c-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-219c-3p

• Accession: MIMAT0042434
• Description: Metriaclima zebra mze-miR-219c-3p mature miRNA
• Sequence: 45 - AGAAUUGUGCCUGGACAUCUGU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381