Stem-loop mze-mir-10554-1

Accession

MI0034258

Description

Metriaclima zebra mze-mir-10554-1 precursor miRNA

Sequence

645 reads, 22.0 reads per million, 7 experiments

UCAGUGGAUCUGCGCUCGacagugcagccuaggcggaguagUCGAGCGCAGAUUCACUGAGC
(((((((((((((((((((((.(.(.((....))).).).))))))))))))))))))))..

Structure

--                    - g g a  c 
  UCAGUGGAUCUGCGCUCGac a u c gc u
  |||||||||||||||||||| | | | ||  
  AGUCACUUAGACGCGAGCUg u a g cg a
CG                    a g g -  g 

Annotation confidence High

Genome context

AGTA03000044.1: 345558-345619 [-]

Mature mze-miR-10554-5p

• Accession: MIMAT0060071
• Description: Metriaclima zebra mze-miR-10554-5p mature miRNA
• Sequence: 1 - UCAGUGGAUCUGCGCUCG - 18
• Evidence: experimental ; Illumina [1]

Mature mze-miR-10554-3p

• Accession: MIMAT0042454
• Description: Metriaclima zebra mze-miR-10554-3p mature miRNA
• Sequence: 42 - UCGAGCGCAGAUUCACUGAGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381