Stem-loop nbr-mir-183-1

Accession

MI0034276

Description

Neolamprologus brichardi nbr-mir-183-1 precursor miRNA

Sequence

221918 reads, 13579.0 reads per million, 7 experiments

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  AUACCG    ACCAU  UAAGUgac      a
aA      GGAU     --        uaucac 

Annotation confidence High

Genome context

JH422288.1: 6537145-6537206 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-183-1

Mature nbr-miR-183-5p

• Accession: MIMAT0042467
• Description: Neolamprologus brichardi nbr-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-183-3p

• Accession: MIMAT0060079
• Description: Neolamprologus brichardi nbr-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381