miRBase entry: nbr-mir-183-1

Stem-loop nbr-mir-183-1

Accession

MI0034276

Description

Neolamprologus brichardi nbr-mir-183-1 precursor miRNA

Sequence

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  auaccg    accau  uaagugac      a
aa      ggau     --        uaucac

Annotation confidence Not enough data

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Genome context

JH422288.1: 6537145-6537206 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-183-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-183

Accession	MIMAT0042467
Description	Neolamprologus brichardi nbr-miR-183 mature miRNA
Sequence	1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381