Stem-loop nbr-mir-192

Accession

MI0034277

Description

Neolamprologus brichardi nbr-mir-192 precursor miRNA

Sequence

77828 reads, 5114.0 reads per million, 7 experiments

AUGACCUAUGAAUUGACAGCCagugauuuccagccucugCCUGUCAGUUCUGUAGGCCACU
.((.(((((((((((((((.(((.(.........).))).)))))))))).))))).))..

Structure

-A  A     -          C   u auu 
  UG CCUAU GAAUUGACAG Cag g   u
  || ||||| |||||||||| ||| |   c
  AC GGAUG CUUGACUGUC guc c   c
UC  C     U          C   u cga 

Annotation confidence High

Genome context

JH422337.1: 670252-670312 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-192

Mature nbr-miR-192-5p

• Accession: MIMAT0042468
• Description: Neolamprologus brichardi nbr-miR-192-5p mature miRNA
• Sequence: 1 - AUGACCUAUGAAUUGACAGCC - 21
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-192-3p

• Accession: MIMAT0060080
• Description: Neolamprologus brichardi nbr-miR-192-3p mature miRNA
• Sequence: 40 - CCUGUCAGUUCUGUAGGCCACU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381