Stem-loop nbr-mir-182

Accession

MI0034278

Description

Neolamprologus brichardi nbr-mir-182 precursor miRNA

Sequence

89939 reads, 5719.0 reads per million, 7 experiments

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggUGGUUCUAGACUUGCCAACU
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure

-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  AACCGUU   AUCUUG   GUggcc      g
UC       CAG      ---      uaggua 

Annotation confidence High

Genome context

JH422274.1: 7271902-7271965 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-182

Mature nbr-miR-182-5p

• Accession: MIMAT0042469
• Description: Neolamprologus brichardi nbr-miR-182-5p mature miRNA
• Sequence: 1 - UUUGGCAAUGGUAGAACUCACA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-182-3p

• Accession: MIMAT0060081
• Description: Neolamprologus brichardi nbr-miR-182-3p mature miRNA
• Sequence: 45 - UGGUUCUAGACUUGCCAACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381