Stem-loop nbr-mir-92a-1

Accession

MI0034281

Description

Neolamprologus brichardi nbr-mir-92a-1 precursor miRNA

Sequence

3995589 reads, 231667.0 reads per million, 7 experiments

AGGUUGGGAGAGGUAGCAAUGCUcugugcuuguguggUAUUGCACUUGUCCCGGCCUGU
(((((((((.((((.((((((((....((....)))))))))))))).)))))))))..

Structure

--         G    A        cugu  u 
  AGGUUGGGA AGGU GCAAUGCU    gc u
  ||||||||| |||| ||||||||    ||  
  UCCGGCCCU UUCA CGUUAUgg    ug g
UG         G    -        ----  u 

Annotation confidence High

Genome context

JH422286.1: 6064717-6064775 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from nbr-mir-92a-1

Mature nbr-miR-92a-1-5p

• Accession: MIMAT0060085
• Description: Neolamprologus brichardi nbr-miR-92a-1-5p mature miRNA
• Sequence: 1 - AGGUUGGGAGAGGUAGCAAUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-92a-3p

• Accession: MIMAT0042471
• Description: Neolamprologus brichardi nbr-miR-92a-3p mature miRNA
• Sequence: 38 - UAUUGCACUUGUCCCGGCCUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381