Stem-loop nbr-mir-21-1

Accession

MI0034284

Description

Neolamprologus brichardi nbr-mir-21-1 precursor miRNA

Sequence

1185729 reads, 64326.0 reads per million, 7 experiments

UAGCUUAUCAGACUGGUGUUGGCuguuggaugugcuuggCAACAGCGGUCUGUAAGCUGGC
(((((((.(((((((.(((((.(.((.......))..).))))).))))))))))))))..

Structure

--       U       G     G -u  ug 
  UAGCUUA CAGACUG UGUUG C  gu  g
  ||||||| ||||||| ||||| |  ||  a
  GUCGAAU GUCUGGC ACAAC g  cg  u
CG       -       G     g uu  ug 

Annotation confidence High

Genome context

JH422340.1: 665363-665423 [+]

Mature nbr-miR-21-5p

• Accession: MIMAT0042472
• Description: Neolamprologus brichardi nbr-miR-21-5p mature miRNA
• Sequence: 1 - UAGCUUAUCAGACUGGUGUUGGC - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-21-1-3p

• Accession: MIMAT0060088
• Description: Neolamprologus brichardi nbr-miR-21-1-3p mature miRNA
• Sequence: 40 - CAACAGCGGUCUGUAAGCUGGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381