Stem-loop nbr-mir-204-1

Accession

MI0034289

Description

Neolamprologus brichardi nbr-mir-204-1 precursor miRNA

Sequence

55584 reads, 3159.0 reads per million, 7 experiments

UUCCCUUUGUCAUCCUAUGCCUggagcugucuguaagGCAGGGACAGCAAAGGGGAGC
((((((((((..((((.((((((((....)))...)))))))))..))))))))))..

Structure

--          CA    A     ---   g 
  UUCCCUUUGU  UCCU UGCCU   gga c
  ||||||||||  |||| |||||   |||  
  AGGGGAAACG  AGGG ACGga   ucu u
CG          AC    -     aug   g 

Annotation confidence High

Genome context

JH422273.1: 683031-683088 [+]

Mature nbr-miR-204-5p

• Accession: MIMAT0042473
• Description: Neolamprologus brichardi nbr-miR-204-5p mature miRNA
• Sequence: 1 - UUCCCUUUGUCAUCCUAUGCCU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-204-1-3p

• Accession: MIMAT0060089
• Description: Neolamprologus brichardi nbr-miR-204-1-3p mature miRNA
• Sequence: 38 - GCAGGGACAGCAAAGGGGAGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381