Stem-loop nbr-mir-199-2

Accession

MI0034291

Description

Neolamprologus brichardi nbr-mir-199-2 precursor miRNA

Sequence

312707 reads, 17602.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAuugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure

-C       U        C   U    guc 
  CCAGUGU CAGACUAC UGU CAuu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 

Annotation confidence High

Genome context

JH422283.1: 9847115-9847174 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-199-2

Mature nbr-miR-199-5p

• Accession: MIMAT0060092
• Description: Neolamprologus brichardi nbr-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCA - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-199-3p

• Accession: MIMAT0042474
• Description: Neolamprologus brichardi nbr-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381