Stem-loop nbr-mir-199-3

Accession

MI0034293

Description

Neolamprologus brichardi nbr-mir-199-3 precursor miRNA

Sequence

534201 reads, 30062.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAGgaaguagugguuguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.(((..........))).))))))))))).)))))))..

Structure

-C       U        C   U   gaag 
  CCAGUGU CAGACUAC UGU CAG    u
  ||||||| |||||||| ||| |||     
  GGUUACA GUCUGAUG ACA guu    a
UU       C        -   u   ggug 

Annotation confidence High

Genome context

JH422287.1: 6760300-6760359 [-]

Mature nbr-miR-199-5p

• Accession: MIMAT0060092
• Description: Neolamprologus brichardi nbr-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCAG - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-199-3p

• Accession: MIMAT0042474
• Description: Neolamprologus brichardi nbr-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381