Stem-loop nbr-mir-100-2

Accession

MI0034294

Description

Neolamprologus brichardi nbr-mir-100-2 precursor miRNA

Sequence

403746 reads, 21641.0 reads per million, 7 experiments

AACCCGUAGAUCCGAACUUGUGgugacuggcugcaCAAGCUCGUAUCUAUAGGUAUG
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      guga 
   ACC GUAGAU CGA CUUGUG    c
   ||| |||||| ||| ||||||    u
   UGG UAUCUA GCU GAACac    g
GUA   A      U   C      gucg 

Annotation confidence High

Genome context

JH422361.1: 1270019-1270075 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-100-2

Mature nbr-miR-100-5p

• Accession: MIMAT0042475
• Description: Neolamprologus brichardi nbr-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-100-2-3p

• Accession: MIMAT0060093
• Description: Neolamprologus brichardi nbr-miR-100-2-3p mature miRNA
• Sequence: 36 - CAAGCUCGUAUCUAUAGGUAUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381