Stem-loop nbr-mir-199-4

Accession

MI0034296

Description

Neolamprologus brichardi nbr-mir-199-4 precursor miRNA

Sequence

301729 reads, 16957.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAucaagcugcagcugaACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.((((((.(........).)))))))))))))).)))))))..

Structure

-C       U        C      u aag 
  CCAGUGU CAGACUAC UGUUCA c   c
  ||||||| |||||||| |||||| |    
  GGUUACA GUCUGAUG ACAagu g   u
UU       C        -      c acg 

Annotation confidence High

Genome context

JH422293.1: 523371-523430 [+]

Mature nbr-miR-199-5p

• Accession: MIMAT0060092
• Description: Neolamprologus brichardi nbr-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCA - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-199-3p

• Accession: MIMAT0042474
• Description: Neolamprologus brichardi nbr-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381