Stem-loop nbr-mir-30a

Accession

MI0034301

Description

Neolamprologus brichardi nbr-mir-30a precursor miRNA

Sequence

85236 reads, 4596.0 reads per million, 7 experiments

UGUAAACAUCCUUGACUGGAAGCUgagguuuugacagcgagggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure

--           UU           gag   u 
  UGUAAACAUCC  GACUGGAAGCU   guu u
  |||||||||||  |||||||||||   ||| g
  ACGUUUGUAGG  CUGACUUUCgg   cga a
CG           --           gag   c 

Annotation confidence High

Genome context

JH422285.1: 4404400-4404464 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-30a

Mature nbr-miR-30a-5p

• Accession: MIMAT0042478
• Description: Neolamprologus brichardi nbr-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-30a-3p

• Accession: MIMAT0060100
• Description: Neolamprologus brichardi nbr-miR-30a-3p mature miRNA
• Sequence: 44 - CUUUCAGUCGGAUGUUUGCAGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381