Stem-loop nbr-mir-27b

Accession

MI0034302

Description

Neolamprologus brichardi nbr-mir-27b precursor miRNA

Literature search

1 open access papers mention nbr-mir-27b
(1 sentences)

Sequence

76474 reads, 4200.0 reads per million, 7 experiments

AGAGCUUAGCUGAUUGGUGAACAGugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           G    G       u  uug 
  AGAGCUUAGCU AUUG UGAACAG ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 

Annotation confidence High

Genome context

JH422289.1: 3781496-3781558 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-27b

Mature nbr-miR-27b-5p

• Accession: MIMAT0060101
• Description: Neolamprologus brichardi nbr-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAACAG - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-27b-3p

• Accession: MIMAT0042479
• Description: Neolamprologus brichardi nbr-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381