miRBase entry: nbr-mir-27b

Stem-loop nbr-mir-27b

Accession

MI0034302

Description

Neolamprologus brichardi nbr-mir-27b precursor miRNA

Sequence

agagcuuagcugauuggugaacagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           g    g       u  uug 
  agagcuuagcu auug ugaacag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc

Annotation confidence Not enough data

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Genome context

JH422289.1: 3781496-3781558 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-27b

Accession	MIMAT0042479
Description	Neolamprologus brichardi nbr-miR-27b mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381