Stem-loop nbr-let-7a-3

Accession

MI0034308

Description

Neolamprologus brichardi nbr-let-7a-3 precursor miRNA

Sequence

103832 reads, 6044.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUuggugggugggacugcacccugcucaggugauaaCUAUACAGUCUAUUGCCUUCCc
.(((((((((((((((((((((...((((((((.......))))))))......)))))))))))))))))))))...

Structure

--U                     ---ugg        ac 
   GAGGUAGUAGGUUGUAUAGUU      uggguggg  u
   |||||||||||||||||||||      ||||||||  g
   UUCCGUUAUCUGACAUAUCaa      acucgucc  c
cCC                     uagugg        ca 

Annotation confidence High

Genome context

JH422281.1: 12511890-12511967 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7a-3

Mature nbr-let-7a-5p

• Accession: MIMAT0042483
• Description: Neolamprologus brichardi nbr-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7a-3-3p

• Accession: MIMAT0060108
• Description: Neolamprologus brichardi nbr-let-7a-3-3p mature miRNA
• Sequence: 57 - CUAUACAGUCUAUUGCCUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381