Stem-loop nbr-let-7a-6

Accession

MI0034309

Description

Neolamprologus brichardi nbr-let-7a-6 precursor miRNA

Sequence

96942 reads, 5588.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUugugggauggacucaauccuauucaggugauaaCUAUACAGCCUAUUACCUUCCUu
.(((((((((((((((((((((.(((((((.......))))))).........)))))))))))))))))))))....

Structure

---U                     --------u       gg 
    GAGGUAGUAGGUUGUAUAGUU         gugggau  a
    |||||||||||||||||||||         |||||||  c
    UUCCAUUAUCCGACAUAUCaa         uauccua  u
uUCC                     uaguggacu       ac 

Annotation confidence Not enough data

Genome context

JH422277.1: 3948288-3948365 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7a-6

Mature nbr-let-7a-5p

• Accession: MIMAT0042483
• Description: Neolamprologus brichardi nbr-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7a-6-3p

• Accession: MIMAT0060111
• Description: Neolamprologus brichardi nbr-let-7a-6-3p mature miRNA
• Sequence: 56 - CUAUACAGCCUAUUACCUUCCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381