miRBase entry: nbr-let-7a-6

Stem-loop nbr-let-7a-6

Accession

MI0034309

Description

Neolamprologus brichardi nbr-let-7a-6 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUugugggauggacucaauccuauucaggugauaacuauacagccuauuaccuuccuu
.(((((((((((((((((((((.(((((((.......))))))).........)))))))))))))))))))))....

Structure

---U                     --------u       gg 
    GAGGUAGUAGGUUGUAUAGUU         gugggau  a
    |||||||||||||||||||||         |||||||  c
    uuccauuauccgacauaucaa         uauccua  u
uucc                     uaguggacu       ac

Annotation confidence Not enough data

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Genome context

JH422277.1: 3948288-3948365 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7a-6

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-let-7a

Accession	MIMAT0042483
Description	Neolamprologus brichardi nbr-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381