Stem-loop nbr-let-7a-5

Accession

MI0034311

Description

Neolamprologus brichardi nbr-let-7a-5 precursor miRNA

Sequence

82898 reads, 4666.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUcagagugacaccacaggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))...

Structure

--U   G   U            --  -aga   a 
   GAG UAG AGGUUGUAUAGU  Uc    gug c
   ||| ||| ||||||||||||  ||    |||  
   UUC AUC UCCGACAUGUCa  ag    cac a
CCU   G   C            au  agga   c 

Annotation confidence High

Genome context

JH422361.1: 1270528-1270594 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-let-7a-5

Mature nbr-let-7a-5p

• Accession: MIMAT0042483
• Description: Neolamprologus brichardi nbr-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7a-5-3p

• Accession: MIMAT0060110
• Description: Neolamprologus brichardi nbr-let-7a-5-3p mature miRNA
• Sequence: 46 - CUGUACAGCCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381