Stem-loop nbr-mir-205-1

Accession

MI0034313

Description

Neolamprologus brichardi nbr-mir-205-1 precursor miRNA

Sequence

226748 reads, 13430.0 reads per million, 7 experiments

UCCUUCAUUCCACCGGAGUCUGuguaaagugcuaaucaGAUUUCAGUGGUUUGAAGAGUA
..(((((..((((.((((((((..((......))..)))))))).))))..)))))....

Structure

--UC     UU    C        ug  aa 
    CUUCA  CCAC GGAGUCUG  ua  g
    |||||  |||| ||||||||  ||   
    GAAGU  GGUG CUUUAGac  au  u
AUGA     UU    A        ua  cg 

Annotation confidence High

Genome context

JH422277.1: 5262943-5263002 [+]

Mature nbr-miR-205-5p

• Accession: MIMAT0042484
• Description: Neolamprologus brichardi nbr-miR-205-5p mature miRNA
• Sequence: 1 - UCCUUCAUUCCACCGGAGUCUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-205-1-3p

• Accession: MIMAT0060112
• Description: Neolamprologus brichardi nbr-miR-205-1-3p mature miRNA
• Sequence: 39 - GAUUUCAGUGGUUUGAAGAGUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381