Stem-loop nbr-mir-133a-1

Accession

MI0034315

Description

Neolamprologus brichardi nbr-mir-133a-1 precursor miRNA

Sequence

31273 reads, 1945.0 reads per million, 7 experiments

AGCUGGUAAAAUGGAACCAAAucaacuguucaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       AA  U  A        aacug 
  AGCUGGU  AA GG ACCAAAuc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaac 

Annotation confidence High

Genome context

JH422387.1: 470488-470547 [+]

Mature nbr-miR-133a-5p

• Accession: MIMAT0060115
• Description: Neolamprologus brichardi nbr-miR-133a-5p mature miRNA
• Sequence: 1 - AGCUGGUAAAAUGGAACCAAA - 21
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-133a-3p

• Accession: MIMAT0042486
• Description: Neolamprologus brichardi nbr-miR-133a-3p mature miRNA
• Sequence: 39 - UUGGUCCCCUUCAACCAGCUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381