Stem-loop nbr-mir-222-1

Accession

MI0034321

Description

Neolamprologus brichardi nbr-mir-222-1 precursor miRNA

Sequence

203925 reads, 11748.0 reads per million, 7 experiments

UGCUCAGUAGUCAGUGUAGAUCcuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--U             -     AUC    gg 
   GCUCAGUAGUCAG UGUAG   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 

Annotation confidence High

Genome context

JH422312.1: 100998-101059 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-222-1

Mature nbr-miR-222-1-5p

• Accession: MIMAT0060120
• Description: Neolamprologus brichardi nbr-miR-222-1-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGUCAGUGUAGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-222-3p

• Accession: MIMAT0042490
• Description: Neolamprologus brichardi nbr-miR-222-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381