Stem-loop nbr-mir-153a-1

Accession

MI0034323

Description

Neolamprologus brichardi nbr-mir-153a-1 precursor miRNA

Sequence

3998 reads, 261.0 reads per million, 7 experiments

UCAUUUUUGUGAUGUUGCAGCUaguaauauaagcccagUUGCAUAGUCACAAAAGUGAUC
(((((((((((((..(((((((.((.......))..)))))))..)))))))))))))..

Structure

--             GU       -a  aa 
  UCAUUUUUGUGAU  UGCAGCU  gu  u
  |||||||||||||  |||||||  ||  a
  AGUGAAAACACUG  ACGUUga  cg  u
CU             AU       cc  aa 

Annotation confidence High

Genome context

JH422501.1: 293969-294028 [-]

Mature nbr-miR-153a-5p

• Accession: MIMAT0060122
• Description: Neolamprologus brichardi nbr-miR-153a-5p mature miRNA
• Sequence: 1 - UCAUUUUUGUGAUGUUGCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-153a-3p

• Accession: MIMAT0042492
• Description: Neolamprologus brichardi nbr-miR-153a-3p mature miRNA
• Sequence: 39 - UUGCAUAGUCACAAAAGUGAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381