miRBase entry: nbr-mir-125a-1

Stem-loop nbr-mir-125a-1

Accession

MI0034330

Description

Neolamprologus brichardi nbr-mir-125a-1 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucacaggugagguccuugggaac
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  aggg uuc  ggagu ggacacug    g
ca    -   cu     -        gaaa

Annotation confidence Not enough data

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Genome context

JH422285.1: 8570236-8570293 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-125a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-125a

Accession	MIMAT0042498
Description	Neolamprologus brichardi nbr-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381