Stem-loop nbr-mir-125a-1

Accession

MI0034330

Description

Neolamprologus brichardi nbr-mir-125a-1 precursor miRNA

Sequence

144893 reads, 8101.0 reads per million, 7 experiments

UCCCUGAGACCCUUAACCUGUGAugauaugaaaggucaCAGGUGAGGUCCUUGGGAAC
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGAu    u
  |||| |||  ||||| ||||||||     
  AGGG UUC  GGAGU GGACacug    g
CA    -   CU     -        gaaa 

Annotation confidence High

Genome context

JH422285.1: 8570236-8570293 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-125a-1

Mature nbr-miR-125a-5p

• Accession: MIMAT0042498
• Description: Neolamprologus brichardi nbr-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-125a-1-3p

• Accession: MIMAT0060128
• Description: Neolamprologus brichardi nbr-miR-125a-1-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUUGGGAAC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381