miRBase entry: nbr-mir-125a-2

Stem-loop nbr-mir-125a-2

Accession

MI0034331

Description

Neolamprologus brichardi nbr-mir-125a-2 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaggucaaagcaggucacaggugagguccucgggaaca
..((((((..(((((.(((((((............))))))))))))..))))))....

Structure

--UC      AC     A       gguca 
    CCUGAG  CCUUA CCUGUGa     a
    ||||||  ||||| |||||||      
    gggcuc  ggagu ggacacu     a
acaa      cu     -       ggacg

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422307.1: 165174-165232 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-125a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-125a

Accession	MIMAT0042498
Description	Neolamprologus brichardi nbr-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381