miRBase entry: nbr-mir-125a-2

Stem-loop nbr-mir-125a-2


Accession
MI0034331
Description
Neolamprologus brichardi nbr-mir-125a-2 precursor miRNA


Sequence

260755 reads, 14972.0 reads per million, 7 experiments
UCCCUGAGACCCUUAACCUGUGAggucaaagcaggucACAGGUGAGGUCCUCGGGAACA
..((((((..(((((.(((((((............))))))))))))..))))))....

Structure
--UC      AC     A       gguca 
    CCUGAG  CCUUA CCUGUGA     a
    ||||||  ||||| |||||||      
    GGGCUC  GGAGU GGACAcu     a
ACAA      CU     -       ggacg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
JH422307.1: 165174-165232 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-125a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-125a-5p

Accession MIMAT0042498
Description Neolamprologus brichardi nbr-miR-125a-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUGA - 23
Evidence experimental
Illumina [1]

Mature nbr-miR-125a-2-3p

Accession MIMAT0060129
Description Neolamprologus brichardi nbr-miR-125a-2-3p mature miRNA
Sequence 38 - ACAGGUGAGGUCCUCGGGAACA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381