miRBase entry: nbr-mir-125b-2

Stem-loop nbr-mir-125b-2


Accession
MI0034332
Description
Neolamprologus brichardi nbr-mir-125b-2 precursor miRNA


Sequence

124198 reads, 7209.0 reads per million, 7 experiments
UCCCUGAGACCCUAACUUGUGAcguugugcuuucauguccACGGGUUAGGCUCUCGGGAGCU
..(((((((.(((((((((((((((.(......))))).))))))))))).)))))))....

Structure
--UC       C           -    u ug 
    CCUGAGA CCUAACUUGUG Acgu g  c
    ||||||| ||||||||||| |||| |   
    GGGCUCU GGAUUGGGCAc ugua c  u
UCGA       C           c    - uu 


Annotation confidence High
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Genome context
JH422335.1: 3465300-3465361 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from nbr-mir-125b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-125b-5p

Accession MIMAT0042499
Description Neolamprologus brichardi nbr-miR-125b-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

Mature nbr-miR-125b-2-3p

Accession MIMAT0060130
Description Neolamprologus brichardi nbr-miR-125b-2-3p mature miRNA
Sequence 41 - ACGGGUUAGGCUCUCGGGAGCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381