Stem-loop nbr-let-7d-2

Accession

MI0034334

Description

Neolamprologus brichardi nbr-let-7d-2 precursor miRNA

Sequence

110231 reads, 6070.0 reads per million, 7 experiments

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaaaagccuggagauaaCUGUACAACCUUCUAGCUUUCC
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  gcauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   UUC AUC  CCAACAUGUCaa ag        a
CCU   G   UU            u  agguccga 

Annotation confidence High

Genome context

JH422285.1: 8574250-8574319 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7d-2

Mature nbr-let-7d-5p

• Accession: MIMAT0042500
• Description: Neolamprologus brichardi nbr-let-7d-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7d-3p

• Accession: MIMAT0060133
• Description: Neolamprologus brichardi nbr-let-7d-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381