Stem-loop nbr-mir-19b-1

Accession

MI0034339

Description

Neolamprologus brichardi nbr-mir-19b-1 precursor miRNA

Sequence

5055 reads, 331.0 reads per million, 7 experiments

UUUUGCUGGUUUGCAUUCAGCUuuaacgguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((..((((.............)))))))))).))).))))))...

Structure

---      -   -      UU    Uuuaa 
   UUUUGC UGG UUUGCA  CAGC     c
   |||||| ||| ||||||  ||||     g
   AAAACG ACC AAACGU  GUcg     g
GUC      U   U      --    uuugu 

Annotation confidence Not enough data

Genome context

JH422273.1: 20860047-20860104 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-19b-1

Mature nbr-miR-19b-1-5p

• Accession: MIMAT0060219
• Description: Neolamprologus brichardi nbr-miR-19b-1-5p mature miRNA
• Sequence: 1 - UUUUGCUGGUUUGCAUUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-19b-3p

• Accession: MIMAT0042503
• Description: Neolamprologus brichardi nbr-miR-19b-3p mature miRNA
• Sequence: 37 - UGUGCAAAUCCAUGCAAAACUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381