Stem-loop nbr-mir-99b

Accession

MI0034341

Description

Neolamprologus brichardi nbr-mir-99b precursor miRNA

Sequence

213326 reads, 11304.0 reads per million, 7 experiments

AACCCGUAGAUCCGAUCUUGUGgcaaaugugacagcaCAAGCUCGCCUCUGUGGGUCUU
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcaaa 
   ACCCGUAGA  CGA CUUGUG     u
   |||||||||  ||| ||||||     g
   UGGGUGUCU  GCU GAACac     u
UUC         CC   C      gacag 

Annotation confidence High

Genome context

JH422457.1: 315456-315514 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-99b

Mature nbr-miR-99b-5p

• Accession: MIMAT0042505
• Description: Neolamprologus brichardi nbr-miR-99b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-99b-3p

• Accession: MIMAT0060139
• Description: Neolamprologus brichardi nbr-miR-99b-3p mature miRNA
• Sequence: 38 - CAAGCUCGCCUCUGUGGGUCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381