Stem-loop nbr-mir-214-1

Accession

MI0034348

Description

Neolamprologus brichardi nbr-mir-214-1 precursor miRNA

Sequence

29106 reads, 1716.0 reads per million, 7 experiments

UGCCUGUCUACACUUGCUGUGCAGAccuucugcuccuguACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure

--         ACA            Accu 
  UGCCUGUCU   CUUGCUGUGCAG    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    u
AG         CAC            cucg 

Annotation confidence High

Genome context

JH422290.1: 762118-762178 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-214-1

Mature nbr-miR-214-1-5p

• Accession: MIMAT0060144
• Description: Neolamprologus brichardi nbr-miR-214-1-5p mature miRNA
• Sequence: 1 - UGCCUGUCUACACUUGCUGUGCAGA - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-214-2-3p

• Accession: MIMAT0042510
• Description: Neolamprologus brichardi nbr-miR-214-2-3p mature miRNA
• Sequence: 40 - ACAGCAGGCACAGACAGGCAGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381