Stem-loop nbr-mir-125b-1

Accession

MI0034349

Description

Neolamprologus brichardi nbr-mir-125b-1 precursor miRNA

Sequence

108869 reads, 6339.0 reads per million, 7 experiments

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcACGGGUUGGGUUCUUGGGAGCU
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure

---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   AGGG UUCU GGGUUGGGCAc uguag  u
UCG    -    U           g     ug 

Annotation confidence High

Genome context

JH422361.1: 1275178-1275239 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-125b-1

Mature nbr-miR-125b-5p

• Accession: MIMAT0042499
• Description: Neolamprologus brichardi nbr-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-125b-1-3p

• Accession: MIMAT0060131
• Description: Neolamprologus brichardi nbr-miR-125b-1-3p mature miRNA
• Sequence: 41 - ACGGGUUGGGUUCUUGGGAGCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381