miRBase entry: nbr-mir-125b-1

Stem-loop nbr-mir-125b-1

Accession

MI0034349

Description

Neolamprologus brichardi nbr-mir-125b-1 precursor miRNA

Sequence

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcacggguuggguucuugggagcu
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure

---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   aggg uucu ggguugggcac uguag  u
ucg    -    u           g     ug

Annotation confidence Not enough data

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Genome context

JH422361.1: 1275178-1275239 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-125b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-125b

Accession	MIMAT0042499
Description	Neolamprologus brichardi nbr-miR-125b mature miRNA
Sequence	1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381