Stem-loop nbr-mir-216b

Accession

MI0034352

Description

Neolamprologus brichardi nbr-mir-216b precursor miRNA

Literature search

1 open access papers mention nbr-mir-216b
(3 sentences)

Sequence

99510 reads, 5419.0 reads per million, 7 experiments

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucACAAUCACCUGGAGAGAUUCUG
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure

--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   UUAGAGA GUCC    ACAcu cu    u
GUC       G    ACUA     -  uuua 

Annotation confidence High

Genome context

JH422278.1: 13973351-13973411 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-216b

Mature nbr-miR-216b-5p

• Accession: MIMAT0042513
• Description: Neolamprologus brichardi nbr-miR-216b-5p mature miRNA
• Sequence: 1 - UAAUCUCUGCAGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-216b-3p

• Accession: MIMAT0060147
• Description: Neolamprologus brichardi nbr-miR-216b-3p mature miRNA
• Sequence: 40 - ACAAUCACCUGGAGAGAUUCUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381