Stem-loop nbr-mir-731

Accession

MI0034356

Description

Neolamprologus brichardi nbr-mir-731 precursor miRNA

Sequence

16938 reads, 1024.0 reads per million, 7 experiments

AAUGACACGUUUUCUCCCGGAUUgcugugagcaggaaacgcAACCGGGAAUUUCGUGUCAGCC
..(((((((.....((((((.((((.((.........))))))))))))....)))))))...

Structure

-AA       UUUUC      A    u  gag 
   UGACACG     UCCCGG UUgc gu   c
   |||||||     |||||| |||| ||   a
   ACUGUGC     AGGGCC AAcg ca   g
CCG       -UUUA      -    -  aag 

Annotation confidence High

Genome context

JH422281.1: 5152063-5152125 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-731

Mature nbr-miR-731-5p

• Accession: MIMAT0042516
• Description: Neolamprologus brichardi nbr-miR-731-5p mature miRNA
• Sequence: 1 - AAUGACACGUUUUCUCCCGGAUU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-731-3p

• Accession: MIMAT0060151
• Description: Neolamprologus brichardi nbr-miR-731-3p mature miRNA
• Sequence: 42 - AACCGGGAAUUUCGUGUCAGCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381