Stem-loop nbr-mir-17-1

Accession

MI0034364

Description

Neolamprologus brichardi nbr-mir-17-1 precursor miRNA

Sequence

8919 reads, 520.0 reads per million, 7 experiments

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuaCUGCAGUGGAGGCACUUACAGC
..(((((((..((.(((((...(((........)))...))))).))..))))))).....

Structure

---CA       UA  G     GUA   cua 
     AAGUGCU  CA UGCAG   gua   u
     |||||||  || |||||   |||    
     UUCACGG  GU ACGUC   cau   g
CGACA       AG  G     auc   aag 

Annotation confidence High

Genome context

JH422273.1: 20860676-20860736 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-17-1

Mature nbr-miR-17-5p

• Accession: MIMAT0042522
• Description: Neolamprologus brichardi nbr-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-17-1-3p

• Accession: MIMAT0060157
• Description: Neolamprologus brichardi nbr-miR-17-1-3p mature miRNA
• Sequence: 40 - CUGCAGUGGAGGCACUUACAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381