miRBase entry: nbr-mir-17-2

Stem-loop nbr-mir-17-2

Accession

MI0034365

Description

Neolamprologus brichardi nbr-mir-17-2 precursor miRNA

Sequence

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuacugcagugaaggcacuuucagc
.(((((((((.((.(((((.(((..((....))..)))))))).)).)))))))))....

Structure

---C         A  G     G   uu  g 
    AAAGUGCUU CA UGCAG UAg  uu u
    ||||||||| || ||||| |||  ||  
    uuucacgga gu acguc auc  aa u
cgac         a  g     -   uu  c

Annotation confidence Not enough data

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Genome context

JH422286.1: 6063713-6063772 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from nbr-mir-17-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-17

Accession	MIMAT0042522
Description	Neolamprologus brichardi nbr-miR-17 mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381