Stem-loop nbr-mir-16b

Accession

MI0034366

Description

Neolamprologus brichardi nbr-mir-16b precursor miRNA

Sequence

51664 reads, 2907.0 reads per million, 7 experiments

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuCCAGUAUUGAUCGUACUGCUGAA
((((((.(((..((((((((((.....((((.....).)))))))))))))...))).))))))..

Structure

--      C   -UA          uuaac   - u 
  UAGCAG ACG   AAUAUUGGAG     acu c a
  |||||| |||   ||||||||||     ||| | g
  GUCGUC UGC   UUAUGACCuc     uga g c
AA      A   UAG          -----   a u 

Annotation confidence High

Genome context

JH422286.1: 2609129-2609194 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-16b

Mature nbr-miR-16b-5p

• Accession: MIMAT0042523
• Description: Neolamprologus brichardi nbr-miR-16b-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-16b-3p

• Accession: MIMAT0060159
• Description: Neolamprologus brichardi nbr-miR-16b-3p mature miRNA
• Sequence: 44 - CCAGUAUUGAUCGUACUGCUGAA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381