miRBase entry: nbr-mir-16b

Stem-loop nbr-mir-16b

Accession

MI0034366

Description

Neolamprologus brichardi nbr-mir-16b precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuccaguauugaucguacugcugaa
((((((.(((..((((((((((.....((((.....).)))))))))))))...))).))))))..

Structure

--      C   -UA          uuaac   - u 
  UAGCAG ACG   AAUAUUGGAG     acu c a
  |||||| |||   ||||||||||     ||| | g
  gucguc ugc   uuaugaccuc     uga g c
aa      a   uag          -----   a u

Annotation confidence Not enough data

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Genome context

JH422286.1: 2609129-2609194 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-16b

Accession	MIMAT0042523
Description	Neolamprologus brichardi nbr-miR-16b mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGAG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381